FastQCFastQC Report
Tue 27 Oct 2020
ddSeq7_S2_R2_combined.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameddSeq7_S2_R2_combined.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49832257
Sequences flagged as poor quality0
Sequence length75
%GC39

[WARN]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA14723962.9547046203426026No Hit
GATGTACTCTGCGTTGATACCACTGCTTCCGCGGACAGGCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAA653380.13111587540576378Illumina RNA PCR Primer (100% over 30bp)
GTACTCTGCGTTGATACCACTGCTTCCGCGGACAGGCGTGTAGATCTCGGTGGTCGCCGTATCATTAAAAAAAAG646340.12970313586237928Illumina RNA PCR Primer (100% over 30bp)
GGCGTGTAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA562500.11287869220934545No Hit

[OK]Adapter Content

Adapter graph